Read and parse the extraction scripts in a directory

rxs_parseExtractionScripts(
  path,
  pattern = "\\.[Rr]xs\\.[Rr]md$|\\.Rxs$",
  exclude = c("extractionScriptTemplate.[Rr]xs.[Rr]md", "\\[EXCLUDED]"),
  ignore.case = TRUE,
  recursive = TRUE,
  silent = metabefor::opts$get("silent"),
  progressBar = TRUE,
  showErrors = TRUE,
  encoding = "UTF-8",
  parallel = FALSE
)

Arguments

path: The path containing the extraction scripts.
pattern: The regular expression specifying which files to read.
exclude: A regular expression specifying which files to ignore.
ignore.case: Whether the regular expression is case sensitive.
recursive: Whether to also look in subdirectories.
silent: Whether to be quiet or chatty.
progressBar: Whether to show the progress bar.
showErrors: Whether to show or hide errors that are encountered.
encoding: The files' encoding.
parallel: Whether to use parallel processing.

Value

A list of parsed extraction scripts.

Examples

### Path with example Rxs files
rxsProject_path <-
  system.file(
    "extdata",
    "extraction-examples",
    package = "metabefor"
  ); 

### Parse the files
example_rxsProject <-
  metabefor::rxs_parseExtractionScripts(
    rxsProject_path
  );

### Show the imported project
example_rxsProject;
#> 
#> This Rxs project contains 2 Rxs trees (suggesting it contains data extracted from 2 sources).
#> 
#> These trees contain the following entities:
#> 
#> 'general', 'publicationYear', 'sourceAuthors', 'sourceTitle', 'modeInfo', 'methods', 'sample', 'sampleSize', 'samplingStrategy', 'method', 'variables', 'chalk', 'witches', 'crayons', 'instruments', 'associations', 'chalk_and_witches', 'criminals', 'cops', 'criminals_and_cops', 'NA', 'variableIdentifier', 'measurementLevel', 'associationIdentifier', 'varId1', 'varId2', 'r' & 't'.