Package index • metabefor

All functions
`%IN%`	Case insensitive version of %in%
`orcid_to_shorcid()` `shorcid_to_orcid()`	Converting ORCIDs to ShORCIDs and vice versa
`add_aggregationTree_information()` `add_aggregationTree_information_toRxsTree()`	Add information from an aggregation tree to a Rxs tree
`apply_graph_theme()`	Apply multiple DiagrammeR global graph attributes
`base30toNumeric()` `numericToBase30()`	Conversion between base10 and base30
`bibentry_to_df()`	Convert a bibentry (or more) to a data frame
`bipiped_value_to_vector()` `bipiped_values_to_vector()`	Convert a "bipiped" value (or vector of values) to a vector
`cat0()`	Concatenate to screen without spaces
`checkPkgs()`	Check for presence of a package
`check_duplicate_sources()`	Check for duplicate sources
`cloneRxsProject()`	Clone a full Rxs project object
`countryCodeList()`	Return a list of country codes
`cumulativeDuplicateCount()`	Get the cumulative duplicate count
`dedup_get_stringDistances()`	Get string distances, optionally using multiple cores
`dedup_matches_trimmed()`	Return for needles whether they occur in the haystack, trimmed if desired
`defaultGraphTheme()`	Get default graph theme from options
`deinterlace_file()`	Deinterlace a file
`df_to_named_list()`	Convert a data frame into a named list
`ebsco_example_1`	Simple bibliographic exports from Ebsco
`example_rxsProject_1`	A minimal Rxs project with two sources extracted in three modules
`explode_vector_to_values()`	Explode a vector to values
`extract_doi()`	Extract DOI(s) from a character vector
`extractor_instructions_from_sheet()`	Create extractor instructions from a spreadsheet
`flattenRxsProject_to_wideDf()`	Flatten all sources' Rxs trees to a wide data frame (somewhat brutally)
`flattenNodeValue()` `flattenNodeValues()`	Flatten one or more node values
`heatMap_from_freqTab()` `heatMap_from_rxsProject()` `rxsProject_to_freqTab()` `rxsTreeList_to_freqTab()` `rxsTree_to_freqTab()`	Create a heatmap or frequency table from a list of Rxs trees
`get_multipleValues()`	Get values for multiple entities from a Rxs tree, list of trees, or full Rxs project object
`get_singleValue_fromTree()` `get_singleValue_fromTreeList()` `get_singleValue()`	Get a single value from a Rxs tree, list of trees, or full Rxs project object
`get_valueList_asDf_fromRxsTree()` `get_valueList_asDf()`	Get a value list as data frame from an Rxs tree, list of trees, or full Rxs project
`heading()`	Print a heading
`import_openalex()`	Import an OpenAlex CSV export
`import_search_results()`	Import search results
`is.odd()` `is.even()`	Checking whether numbers are odd or even
`is_TRUE()`	Liberally checking whether a value is TRUE
`knit_rxsTemplate()`	Knit the Rxs Template
`knittedFileSansExt()`	Return the currently knitted file, without `.Rxs.Rmd` extension
`rxsProject_matchingUniqueEntityIdentifiers()` `rxsTree_matchingUniqueEntityIdentifiers()`	Look for all entity identifiers that match a given pattern
`maximizeMatrices()` `maximizeMatrix()`	Adding columns or rows to a matrix
`mbf_as.data.frame.person()`	Convert `utils::person()` object to a data frame
`mergeTrees()`	Merge two Rxs trees (`data.tree` nodes)
`messy_df_to_tree()`	Convert a potentially messy 'network data frame' to a data.tree
`nodeName()`	Check whether a prospective node name is valid, sanitize it, and return it
`openalex_example_1`	Simple bibliographic exports from OpenAlex
`opts`	Options for the metabefor package
`override()`	Override default values with bespoke alternatives
`padVectors()`	In a list of vectors, pad short vectors
`print(<rxsStructure>)`	Printing a parsed Rxs specification
`print(<rxs_parsedExtractionScripts>)`	Printing a project with parsed Rxs file
`knit_print(<rxs>)` `print(<rxs>)` `rxs_partial()`	Printing a tree of R extraction scripts
`query_conceptTerms()` `print(<mbf_query_conceptTerms>)` `query_full()` `print(<mbf_query_full>)` `query_requiredConcepts()` `print(<mbf_query_requiredConcepts>)` `query_toInterfaceLang()` `print(<mbf_query_toInterfaceLang>)`	Building queries
`generate_qurids()` `qurid()`	Generate quasi-unique record identifier
`randomSlug()` `idSlug()`	Generate a random slug
`rbind_df_list()`	Bind lots of dataframes together rowwise
`rbind_dfs()`	Simple alternative for rbind.fill or bind_rows
`read_aggregationTree_from_gs()`	Read an aggregation tree from a Google Sheets URL
`read_spreadsheet()`	Convenience function to read spreadsheet-like files
`renderTreeAsGraph()`	Render a tree as a graph
`repeatStr()`	Repeat a string a number of times
`rxs_export_to_rock()` `rxs_import_from_rock()`	Export an entity to ROCK format and import it back into the Rxs object
`rxsProject_to_valueDf()`	Create a long ('tidy') data frame with the full Rxs tree from each source
`rxsProject_get_entityIds()` `rxsTree_get_entityIds()`	Get all identifiers of all entities in an Rxs tree or project
`rxsTree_has_entity()`	Check whether a Rxs tree has an entity
`rxsTree_to_valueDf()`	Create a long ('tidy') data frame with the full Rxs tree
`rxs_minimal_example_1`	An very rudimentary example Rxs specification
`rxs_minimal_example_2`	A very rudimentary example Rxs specification
`rxs_parseExtractionScripts()`	Read and parse the extraction scripts in a directory
`rxs_parseSingleExtractionScript()`	Read and parse one single extraction script
`rxs_parseSpecifications()`	Parse Rxs (R extraction script) specifications
`rxs_fromSpecifications()`	Generate an Rxs template
`rxs_validation()`	Validate an Rxs tree
`sanitize_for_DiagrammeR()`	Sanitize for DiagrammeR
`get_short_doi()` `get_short_dois()`	Retrieve the short DOI for one or more DOIs
`show_rxsTree_in_rxsStructure()`	Show an imported Rxs structure
`show_search_hits_by_database()`	Show the search hits by database
`show_search_hits_with_dois()`	Show the number of search hits with DOIs
`create_and_save_or_load_rds()` `save_or_load_csv()` `save_or_load_rds()`	Something akin to caching
`specify_search()`	Specify a search
`splitVectors()`	In a list of vectors, split vectors to multiple list elements
`supplementDefaultGraphTheme()`	Supplement / edit the default graph theme
`supplement_data_from_list_inRxsProject()` `supplement_data_from_list_inSingleNode()` `supplement_data_from_lists()`	Supplement a target entity node with clustered entity values from another entity node
`supplement_data_with_value_inRxsProject()` `supplement_data_with_value_inSingleNode()`	Supplement a target entity node with a value from another entity node
`supplement_rxsTrees_from_txs()`	Supplement a full Rxs project object with entities from a tabulated extraction spreadsheet (txs) specification
`tidy_rxsTree()` `tidy_rxsTrees()`	Flatten one or more Rxs trees into a tidy data frame
`transform_entityValue()`	Perform a transformation selectively
`transform_in_every_clusteringEntity()`	Perform a transformation for every clustering entity
`vecTxt()` `vecTxtQ()`	Easily parse a vector into a character value
`rxsProject_vectorValue_to_valueList()` `rxsTreeList_vectorValue_to_valueList()` `rxsTree_vectorValue_to_valueList()` `vectorValue_to_valueList()`	In an entity, convert a vector to a value list
`wrapVector()`	Wrap all elements in a vector
`wrap_error()`	Wrap an error message to try to get users to read it
`write_JabRef_Config()`	Write a JabRef configuration file
`write_extractor_instructions()`	Show and/or write the extractor instructions
`write_screenerPackage()`	Write a 'screener package' to disk
`zapNewlines()`	Zap newlines from a string

Reference

All functions